Genomika eukaryot a laterální genový přenos

Genomika eukaryot a laterální genový přenos

doc. Mgr. Vladimír Hampl, Ph.D.

doc. Mgr. Vladimír Hampl, Ph.D. — Vedoucí projektu

Publikace

2017

Hadariová L, Vesteg M, Hampl V, Krajčovič J. Reductive evolution of chloroplasts in non-photosynthetic plants, algae and protists. Curr Genet. 2017 doi: 10.1007/s00294-017-0761-0

Vanclová, AMG, Hadariová L, Hrdá Š, Hampl V. Secondary Plastids of Euglenophytes. In: Y. Hirakawa (ed.), Advances in Botanical Research, Academic Press 2017. doi: 10.1016/bs.abr.2017.06.008

2016

Hampl V. Preaxostyla. In: J.M. Archibald et al. (eds.), Handbook of the Protists, doi: 10.1007/978-3-319-32669-6_8-1. Springer 2016.

Klinger CM, Karnkowska A, Herman EK, Hampl V, Dacks JB. In the Light of Free-Living Relatives: Understanding the Phylogeny and Evolutionary Cell Biology of Parasites. In: Walochnik J and Duchêne M (eds.), Molecular Parasitology – Protozoan Parasites and their Molecules. Springer 2016.

Hrdá Š, Hroudová M, Vlček Č, Hampl V. Mitochondrial Genome of Prasinophyte Alga Pyramimonas parkeae. J Eukaryot Microbiol. 2016 Sep 28.

Novák L, Zubáčová Z, Karnkowska A, Kolisko M, Hroudová M, Stairs CW, Simpson AGB, Keeling PJ, Roger AJ, Čepička I, Hampl V. Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes. BMC Evol Biol. 2016 Oct 6;16(1):197.

Karnkowska A, Hampl V. The curious case of vanishing mitochondria. Microbial Cell 2016, 3, pp.361-364.

Karnkowska A, Vacek V, Zubáčová Z, Treitli SC, Petrželková R, Eme L, Novák L, Žárský V, Barlow LD, Herman EK, Soukal P, Hroudová M, Doležal P, Stairs CW, Roger AJ, Eliáš M, Dacks JB, Vlček Č, Hampl V. A Eukaryote without a Mitochondrial Organelle. Curr Biol. 2016 May 11.

Zíková A, Hampl V, Paris Z, Týč J, Lukeš J. Aerobic mitochondria of parasitic protists: Diverse genomes and complex functions. Mol Biochem Parasitol. 2016 Feb 22.

2015

Rada P, Makki AR, Zimorski V, Garg S, Hampl V, Hrdý I, Gould SB, Tachezy J. N-Terminal Presequence-Independent Import of Phosphofructokinase into Hydrogenosomes of Trichomonas vaginalis. Eukaryot Cell. 2015 Dec;14(12):1264-75.

2014

Szabová J, Yubuki N, Leander BS, Triemer RE, Hampl V. The evolution of paralogous enzymes MAT and MATX within the Euglenida and beyond. BMC Evol Biol. 2014 Feb 11;14:25

2013

Zubáčová Z, Novák L, Bublíková J, Vacek V, Fousek J, Rídl J, Tachezy J, Doležal P, Vlček Č, Hampl V. The mitochondrion-like organelle of Trimastix pyriformis contains the complete glycine cleavage system. PLoS One. 2013;8(3):e55417.

2012

Krnáčová K, Vesteg M, Hampl V, Vlček Č, Horváth A. Euglena gracilis and Trypanosomatids Possess Common Patterns in Predicted Mitochondrial Targeting Presequences. J Mol Evol. 2012 Oct;75(3-4):119-29. doi: 10.1007/s00239-012-9523-2. Epub 2012 Oct 12.

Adl SM, Simpson AG, Lane CE, Lukeš J, Bass D, Bowser SS, Brown MW, Burki F, Dunthorn M, Hampl V, Heiss A, Hoppenrath M, Lara E, Le Gall L, Lynn DH, McManus H, Mitchell EA, Mozley-Stanridge SE, Parfrey LW, Pawlowski J, Rueckert S, Shadwick L, Schoch CL, Smirnov A, Spiegel FW. The revised classification of eukaryotes. J Eukaryot Microbiol. 2012 Sep;59(5):429-93. doi: 10.1111/j.1550-7408.2012.00644.x.

Huňová K, Kašný M, Hampl V, Leontovyč R, Kuběna A, Mikeš L, Horák P. Radix spp.: Identification of trematode intermediate hosts in the Czech Republic. Acta Parasitol. 2012 Sep;57(3):273-84. Epub 2012 Aug 9.

Hampl V. Kontroverzní a nebojácná dáma. Vesmír 91, 103, 2012/2.

2011

Hampl V, Stairs CW, Roger AJ. The Tangled Past Of Eukaryotic Enzymes Involved In Anaerobic Metabolism. Mobile Genetic Elements Volume 1 Issue 1.

Stairs CW, Roger AJ, Hampl V. Eukaryotic pyruvate formate lyase and its activating enzyme were acquired laterally from a firmicute. Mol Biol Evol. 2011 28(7):2087-2099.

Morada M, Šmíd O, Hampl V, Šuťák R, Lam B, Rappelli P, Dessi D, Fiori PL, Tachezy J, Yarlett N. Hydrogenosome-localization of arginine deiminase in Trichomonas vaginalis. Mol Biochem Parasitol. 2011; 176(1): 51-54.

Výuka

Alumni

jméno název práce typ práce
Naoji Yubuki The origin(s) of the euglenid plastid as inferred from the transcriptome and the genome of a mixotrophic euglenophyte Rapaza viridis Postdoc
Soňa Lukešová Diversity of pyramimonadales algae and evolution of euglenid plastid. MSc graduate
Anna Karnkowska Genomics of oxymonads and trimastix Postdoc
Jana Szabová The evolution of derived form of methionin adenosyltransferase (MATX) in euglenids. PhD graduate
Zuzana Zubáčová Genomes and mitochondrial organelles of preaxostyla Postdoc